Publications

Published articles:

KUTNJAK, Denis, TAMISIER, Lucie, ADAMS, Ian, BOONHAM, Neil, CANDRESSE, Thierry, CHIUMENTI, Michela, DE JONGHE, Kris, KREUZE, Jan F., LEFEBVRE, Marie, SILVA, Goncalo, MALAPI-WIGHT, Martha, MARGARIA, Paolo, MAVRIČ PLEŠKO, Irena, MCGREIG, Sam, MIOZZI, Laura, REMENANT, Benoit, REYNARD, Jean-Sébastien, ROLLIN, Johan, ROTT, Mike, SCHUMPP, Olivier, MASSART, Sébastien, HAEGEMAN, Annelies. A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms. 14 Apr. 2021, vol. 9, iss. 4, str. 1-31, ilustr. ISSN 2076-2607. https://www.mdpi.com/2076-2607/9/4/841, DOI: 10.3390/microorganisms9040841.

PECMAN, Anja, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja, KUTNJAK, Denis. Systematic comparison of nanopore and illumina sequencing for the detection of plant viruses and viroids using total RNA sequencing approach. Frontiers in microbiology. 2022, vol. 13, str. 1-14, ilustr. ISSN 1664-302X. https://www.frontiersin.org/articles/10.3389/fmicb.2022.883921/full.

GRBIN, Dorotea, PECMAN, Anja, ŠERUGA-MUSIĆ, Martina, KUTNJAK, Denis, ŠKORIĆ, Dijana. First report of potato virus S and potato virus Y in tomatoes from Croatia. Plant disease. ISSN 0191-2917. https://apsjournals.apsnet.org/doi/abs/10.1094/PDIS-06-22-1390-PDN, DOI: 10.1094/PDIS-06-22-1390-PDN.

PECMAN, Anja. Characterization of plant viromes using different viral nucleic acids enrichment strategies and high-throughput sequencing platforms : doctoral dissertation = Karakterizacija rastlinskega viroma z uporabo različnih strategij obogatitve virusnih nuklenskih kislin in platform visoko pretočnega sekvenciranja : doktorska disertacija

Conference presentations:

PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. How does nanopore sequencing compare to Illumina sequencing for detection of plant viruses and viroids. V: Programme and abstracts : International Advances in Plant Virology 202: virtually via Zoom: 20 th April – 22 nd April 2021. [S. l.: Association of Applied Biologists], 2021. Str. 116. https://custom.cvent.com/05F40F40EA964BBB968323D70A3E1C38/files/event/ef4ceb27d30d4676a7f14cb5d4dd7663/bd3a825c81194b88a904a9bd5738cd44.pdf.

PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTIÉRREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. On the way to fast “on-site” detecion of plant viruses and viroids. V: HORVAT, Monika (ur.), et al. Cutting Edge 2021 : Scientific conference for young researchers : Independent in science : Thursday, 16. 09. 21, virtual conference : book of abstracts. Ljubljana: Fakulteta za kemijo in kemijsko tehnologijo, 2021. Str. 15, ilustr. ISBN 978-961-7078-21-3. [COBISS.SI-ID 78086403]

KOGEJ, Zala, SELJAK, Gabrijel, RAVNIKAR, Maja, VUČUROVIĆ, Ana, JAKOMIN, Tjaša, BRODARIČ, Jakob, OREŠEK, Erika, MEHLE, Nataša. Raznolikost fitoplazem skupine 16SrV v trtah, leskah in njihovih prenašalcih = Diversity of 16SrV phytoplasma group in grapevine, hazelnut and its vectors. V: TRDAN, Stanislav (ur.). 15. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo = 15th Slovenian Conference on Plant Protection with International Participation : izvlečki referatov = abstract volume : 1.-2. marec 2022, Portorož, Slovenija. Ljubljana: Društvo za varstvo rastlin Slovenije: = Plant Protection Society of Slovenia, 2022. Str. 108-109. ISBN 978-961-93447-8-1. [COBISS.SI-ID 100485123]

KOGEJ, Zala, SELJAK, Gabrijel, JAKOMIN, Tjaša, BRODARIČ, Jakob, VUČUROVIĆ, Ana, RAVNIKAR, Maja, KUTNJAK, Denis, MEHLE, Nataša. Investigation of the diversity of the destructive 16SrV phytoplasma group in grapevine, hazelnut and leafhoppers. V: Epidemiology and management of plant viruses under a changing climate : book of abstracts. 15th ISPVE Madrid 2022, Madrid, Spain, 5-8th June, 2022. [S. l.: s. n., 2022]. Str. 118. [COBISS.SI-ID 111930371]

PECMAN, Anja, KOGEJ ZWITTER, Zala, MEHLE, Nataša, VUČUROVIĆ, Ana, RAVNIKAR, Maja, KUTNJAK, Denis. Uporaba visokozmogljivega sekvenciranja za iskanje karantenskih rastlinskih virusov = The use of high-throughput sequencing for detection of quarantine plant viruses. V: TRDAN, Stanislav (ur.). 15. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo = 15th Slovenian Conference on Plant Protection with International Participation : izvlečki referatov = abstract volume : 1.-2. marec 2022, Portorož, Slovenija. Ljubljana: Društvo za varstvo rastlin Slovenije: = Plant Protection Society of Slovenia, 2022. Str. 84-85. ISBN 978-961-93447-8-1. [COBISS.SI-ID 100509699]

KOGEJ ZWITTER, Zala, SELJAK, Gabrijel, JAKOMIN, Tjaša, BRODARIČ, Jakob, VUČUROVIĆ, Ana, RAVNIKAR, Maja, KUTNJAK, Denis, PEDEMAY, Sandra, SALAR, Pascal, MALEMBIC-MAHER, Sylvie, FOISSAC, Xavier, MEHLE, Nataša. Epidemiology and diversity of 16SrV phytoplasma group infecting grapevine and hazelnut. V: BAEBLER, Špela (ur.), et al. Plants in Changing Environment : international conference of the Slovenian Society of Plant Biology : Biotechnical Faculty, University of Ljubljana, September 15-16, 2022, Ljubljana, Slovenia : [book of abstracts]. 1st electronic ed. Ljubljana: Slovenian Society of Plant Biology, 2022. Str. 45. ISBN 978-961-91014-5-2. https://www.plantslo.org/wp/wp-content/uploads/2022/09/PlantsInChangingEnvironment22AbstractBook.pdf. [COBISS.SI-ID 123154691]

PECMAN, Anja, KOGEJ ZWITTER, Zala, MEHLE, Nataša, VUČUROVIĆ, Ana, RAVNIKAR, Maja, KUTNJAK, Denis. Nanopore sequencing for detection of (quarantine) plant viruses. V: International advances in plant virology 2022 : hybrid event hosted in Ljubljana, Slovenia 5th-7th October 2022 : programme, abstracts and delegate list. Warwick: Association of Applied Biologists, 2022. Str. 63. [COBISS.SI-ID 125013251]

GRBIN, Dorotea, PECMAN, Anja, ČAJKULIČ, Ana-Marija , NOVAK, Adrijana ,ŠERUA MUSIĆ, Martina, KUTNJAK, Denis, ŠKORIČ, Dijana. First glimpse into the tomato and pepper viromes of Croatia. V: International conference VIROID 2022: Viroids, viroid-like RNAs, and RNA viruses (14-16 September 2022 | Heraklion, Greece)