{"id":30,"date":"2016-04-05T22:13:00","date_gmt":"2016-04-05T22:13:00","guid":{"rendered":"http:\/\/projects.nib.si\/nanophyto\/?page_id=30"},"modified":"2024-10-01T17:41:12","modified_gmt":"2024-10-01T16:41:12","slug":"references","status":"publish","type":"page","link":"https:\/\/projects.nib.si\/nanophyto\/references\/","title":{"rendered":"Publications"},"content":{"rendered":"\n

Project report: <\/strong>Project_report<\/a><\/p>\n\n\n\n

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Published articles:<\/u><\/em><\/strong><\/p>\n\n\n\n

KUTNJAK, Denis, TAMISIER, Lucie, ADAMS, Ian, BOONHAM, Neil, CANDRESSE, Thierry, CHIUMENTI, Michela, DE JONGHE, Kris, KREUZE, Jan F., LEFEBVRE, Marie, SILVA, Goncalo, MALAPI-WIGHT, Martha, MARGARIA, Paolo, MAVRI\u010c PLE\u0160KO, Irena, MCGREIG, Sam, MIOZZI, Laura, REMENANT, Benoit, REYNARD, Jean-S\u00e9bastien, ROLLIN, Johan, ROTT, Mike, SCHUMPP, Olivier, MASSART, S\u00e9bastien, HAEGEMAN, Annelies. A primer on the analysis of high-throughput sequencing data for detection of plant viruses. Microorganisms. 14 Apr. 2021, vol. 9, iss. 4, str. 1-31, ilustr. ISSN 2076-2607. https:\/\/www.mdpi.com\/2076-2607\/9\/4\/841<\/a>, DOI: 10.3390\/microorganisms9040841<\/a>. [COBISS.SI-ID 59812099<\/a>]<\/em><\/p>\n\n\n\n

PECMAN, Anja, ADAMS, Ian, GUTI\u00c9RREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja, KUTNJAK, Denis. Systematic comparison of nanopore and illumina sequencing for the detection of plant viruses and viroids using total RNA sequencing approach. Frontiers in microbiology. 2022, vol. 13, str. 1-14, ilustr. ISSN 1664-302X. https:\/\/www.frontiersin.org\/articles\/10.3389\/fmicb.2022.883921\/full<\/a>, DOI: 10.3389\/fmicb.2022.883921<\/a>. [COBISS.SI-ID 108948739<\/a>]<\/em><\/p>\n\n\n\n

GRBIN, Dorotea, PECMAN, Anja, \u0160ERUGA-MUSI\u0106, Martina, KUTNJAK, Denis, \u0160KORI\u0106, Dijana. First report of potato virus S and potato virus Y in tomatoes from Croatia. Plant disease. 2022, str. 1-2,. ISSN 0191-2917. https:\/\/doi.org\/10.1094\/PDIS-06-22-1390-PDN<\/a>, DOI: 10.1094\/PDIS-06-22-1390-PDN<\/a>. [COBISS.SI-ID 116162307<\/a>]<\/em><\/p>\n\n\n\n

KOGEJ ZWITTER, Zala, SELJAK, Gabrijel, JAKOMIN, Tja\u0161a, BRODARI\u010c, Jakob, VU\u010cUROVI\u0106, Ana, PEDEMAY, Sandra, SALAR, Pascal, MALEMBIC-MAHER, Sylvie, FOISSAC, Xavier, MEHLE, Nata\u0161a. Epidemiology of flavescence dor\u00e9e and hazelnut decline in Slovenia : geographical distribution and genetic diversity of the associated 16SrV phytoplasmas. Frontiers in plant science. 2023, vol. 14, [art.] 1217425, str. 1-12, ilustr. ISSN 1664-462X. https:\/\/doi.org\/10.3389\/fpls.2023.1217425<\/a>, https:\/\/www.frontiersin.org\/articles\/10.3389\/fpls.2023.1217425\/full#supplementary-material<\/a>, https:\/\/dirros.openscience.si\/IzpisGradiva.php?id=16723<\/a>. [COBISS.SI-ID 159155203<\/a>]<\/em><\/p>\n\n\n\n

RIVAREZ, Mark Paul Selda, PECMAN, Anja, BA\u010cNIK, Katarina, MAKSIMOVI\u0106, Olivera, VU\u010cUROVI\u0106, Ana, SELJAK, Gabrijel, MEHLE, Nata\u0161a, GUTI\u00c9RREZ-AGUIRRE, Ion, RAVNIKAR, Maja, KUTNJAK, Denis. In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome. 2023, vol. 11, art. 60, str. [1]-24, ilustr. ISSN 2049-2618. https:\/\/doi.org\/10.1186\/s40168-023-01500-6<\/a>, https:\/\/dirros.openscience.si\/IzpisGradiva.php?id=16442<\/a>, DOI: 10.1186\/s40168-023-01500-6<\/a>. [COBISS.SI-ID 148647683<\/a>]<\/em><\/p>\n\n\n\n

KOGEJ ZWITTER, Zala, JAKO\u0160, Nejc, MEHLE, Nata\u0161a. Unravelling the puzzle of 16SrV phytoplasma in hazelnuts : a systematic study of sampling and detection. Phytopathogenic mollicutes. Jun. 2023, vol. 13, iss. 1, str. 139-140. ISSN 2249-4669. http:\/\/dx.doi.org\/10.5958\/2249-4677.2023.00070.1<\/a>, DOI: 10.5958\/2249-4677.2023.00070.1<\/a>. [COBISS.SI-ID 154571011<\/a>]<\/em><\/p>\n\n\n\n

HAEGEMAN, Annelies, FOUCART, Yoika, DE JONGHE, Kris, GOEDEFROIT, Thomas, AL RWAHNIH, Maher, BOONHAM, Neil, CANDRESSE, Thierry, GAAFAR, Yahya, HURTADO-GONZALES, Oscar, KOGEJ ZWITTER, Zala, KUTNJAK, Denis, LAMOV\u0160EK, Janja, MAVRI\u010c PLE\u0160KO, Irena, et al. Looking beyond virus detection in RNA sequencing data : lessons learned from a community-based effort to detect cellular plant pathogens and pests. Plants. Jun. 2023, iss. 11, art. 2135, str. [1]-20, ilustr. ISSN 2223-7747. DOI: 10.3390\/plants12112139<\/a>. [COBISS.SI-ID 154555651<\/a>]<\/em><\/p>\n\n\n\n

Book chapter<\/u><\/em><\/strong><\/p>\n\n\n\n

PECMAN, Anja, MEHLE, Nata\u0161a, KUTNJAK, Denis. Detection of plant viruses using nanopore sequencing based metagenomic approach. V: PANTALEO, Vitantonio (ur.), MIOZZI, Laura (ur.). Viral metagenomics : methods and protocols. 2nd ed. New York: Humana Press, 2024. Str. 251-264. Methods in molecular biology, vol. 2732. ISBN 978-1-0716-3515-5, ISBN 1-0716-3515-8. ISSN 1940-6029. https:\/\/link.springer.com\/protocol\/10.1007\/978-1-0716-3515-5_17<\/a>, DOI: 10.1007\/978-1-0716-3515-5_17. [COBISS.SI-ID 178294275]<\/em><\/p>\n\n\n\n

Conference presentations:<\/u><\/em><\/strong><\/p>\n\n\n\n

PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTI\u00c9RREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. How does nanopore sequencing compare to Illumina sequencing for detection of plant viruses and viroids. V: Programme and abstracts : International Advances in Plant Virology 2021 : virtually via Zoom : 20th April – 22nd April 2021. [S. l.: Association of Applied Biologists], 2021. Str. 116. https:\/\/custom.cvent.com\/05F40F40EA964BBB968323D70A3E1C38\/files\/event\/ef4ceb27d30d4676a7f14cb5d4dd7663\/bd3a825c81194b88a904a9bd5738cd44.pdf<\/a>. [COBISS.SI-ID 62641155<\/a>]<\/em><\/p>\n\n\n\n

PECMAN, Anja, KUTNJAK, Denis, ADAMS, Ian, GUTI\u00c9RREZ-AGUIRRE, Ion, FOX, Adrian, BOONHAM, Neil, RAVNIKAR, Maja. On the way to fast “on-site” detecion of plant viruses and viroids. V: HORVAT, Monika (ur.), et al. Cutting Edge 2021 : scientific conference for young researchers : independent in science : Thursday, 16. 09. 21, virtual conference : book of abstracts. Ljubljana: Fakulteta za kemijo in kemijsko tehnologijo, 2021. Str. 15, ilustr. ISBN 978-961-7078-21-3. [COBISS.SI-ID 78086403<\/a>]<\/em><\/p>\n\n\n\n

Predstavitev planov in rezultatov dela v WP2 v okviru projekta NanoPhyto  na sre\u010danju strokovnjakov s podro\u010dja fitoplazem, ki so vklju\u010deni v Euphresco projekt  FLADO-VIGILANT (2020-A-344):<\/em><\/p>\n\n\n\n