{"id":30,"date":"2016-04-05T22:13:00","date_gmt":"2016-04-05T22:13:00","guid":{"rendered":"http:\/\/projects.nib.si\/phew\/?page_id=30"},"modified":"2026-03-17T15:24:27","modified_gmt":"2026-03-17T14:24:27","slug":"references","status":"publish","type":"page","link":"https:\/\/projects.nib.si\/phew\/references\/","title":{"rendered":"Publications"},"content":{"rendered":"<p><strong>Published papers<\/strong><\/p>\n<ul>\n<li>RIVAREZ, Mark Paul Selda, FAURE, Chantal, SVANELLA-DUMAS, Laurence Svanella-Dumas, PECMAN, Anja, TU\u0160EK-\u017dNIDARI\u010c, Magda, SCH\u00d6NEGGER, Deborah, RAVNIKAR, Maja, KUTNJAK, Denis, et al. Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse plants and global sequencing data.\u00a0<em>Phytopathology : an international journal of the American Phytopathological Society<\/em>. ilustr., zvd. ISSN 1943-7684.\u00a0<a href=\"https:\/\/doi.org\/10.1094\/PHYTO-12-22-0465-V\">https:\/\/doi.org\/10.1094\/PHYTO-12-22-0465-V<\/a><\/li>\n<li>ROS-MONER, Eric, JIM\u00c9NEZ-G\u00d3NGORA, Tamara, VILLAR-MARTIN, Luis, VOGRINEC, Lana, GONZ\u00c1LEZ-MIGUEL, V\u00edctor M., KUTNJAK, Denis, RUBIO-SOMOZA, Ignacio. Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha.\u00a0<em>Nature communications<\/em>. Sep. 2024, vol. 15, iss. 1, article no. 8326, str. 1-17, ilustr. ISSN 2041-1723.\u00a0<a href=\"https:\/\/doi.org\/10.1038\/s41467-024-52610-0\">https:\/\/doi.org\/10.1038\/s41467-024-52610-0<\/a><\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, MEHLE, Nata\u0161a, FOWKES, Aimee R., LENGAR, \u017diva, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Wild and globally traded ornamental aquatic plants harbor diverse plant viruses, including notable crop pathogens.\u00a0<em>Environmental microbiome<\/em>. Oct. 2025, vol. 20, [article no.] 133, str. 1-23, ilustr. ISSN 2524-6372.\u00a0<a href=\"https:\/\/doi.org\/10.1186\/s40793-025-00783-6\">https:\/\/doi.org\/10.1186\/s40793-025-00783-6<\/a><\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>Papers in progress<\/strong><\/p>\n<ul>\n<li>Spatiotemporal dynamics of virome composition along the antropogenically influenced river segment (expected publication date: 2026)<\/li>\n<li>Tracking the dynamics of plant viromes across urban, wild and cultivated environments (expected publication date: 2026\/2027)<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n<p><strong>Conference contributions<\/strong><\/p>\n<ul>\n<li>BA\u010cNIK, Katarina, VOGRINEC, Lana, CURK, Toma\u017e, BA\u010cI\u010c, Martina, MEHLE, Nata\u0161a, KUTNJAK, Denis. Data mining-based discovery of novel tobamoviruses and viruses associated with macrophytes. V:\u00a0<em>12th International Congress on Plant Pathology : ICPP2023 : 20-25 August 2023, Lyon, France<\/em>. Lyon: French Phytopathological Society: 2023. 2023, str. 1253-1254.\u00a0<a href=\"https:\/\/www.icpp2023.org\/sites\/default\/files\/2023-08\/ICPP2023-BOOK-ABSTRACTS-VF.pdf\">https:\/\/www.icpp2023.org\/sites\/default\/files\/2023-08\/ICPP2023-BOOK-ABSTRACTS-VF.pdf<\/a><\/li>\n<li>BA\u010cNIK, Katarina, VOGRINEC, Lana, TURK DERMASTIA, Timotej, PAJEK ARAMBA\u0160I\u0106, Ne\u017ea, CURK, Toma\u017e, BA\u010cI\u010c, Martina, MEHLE, Nata\u0161a, KUTNJAK, Denis. Data mining-based discovery of (novel) viral sequences in various host organisms and environmental samples. V: STOPNI\u0160EK, Nejc (ur.).\u00a0<em>Slovenian Microbiome Network Symposium 2023 : Defining a healthy microbiome : 30. 11. &#8211; 1. 12. 2023, Maribor, Slovenia : abstract book<\/em>. Maribor: Nacionalni laboratorij za zdravje, okolje in hrano, 2023. Str. 25-26. ISBN 978-961-6148-23-8.\u00a0<a href=\"https:\/\/doi.org\/10.5281\/zenodo.10214965\">https:\/\/doi.org\/10.5281\/zenodo.10214965<\/a><\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, MIOVI\u010c, Zarja, KUTNJAK, Denis. Viromes of aquatic plants. V: STOPNI\u0160EK, Nejc (ur.).\u00a0<em>Slovenian Microbiome Network Symposium 2023 : Defining a healthy microbiome : 30. 11. &#8211; 1. 12. 2023, Maribor, Slovenia : abstract book<\/em>. Maribor: Nacionalni laboratorij za zdravje, okolje in hrano, 2023. Str. 90. ISBN 978-961-6148-23-8.\u00a0<a href=\"https:\/\/doi.org\/10.5281\/zenodo.10214965\">https:\/\/doi.org\/10.5281\/zenodo.10214965<\/a><\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, KUTNJAK, Denis. Comprehensive review and data mining based discovery of viruses associated with macrophytes. V:\u00a0<em>Virology 2023 : 8th European Congress : 4-7 May 2023 : Gdansk, Poland : abstracts<\/em>. Jena: Conventus Congressmanagement &amp; Marketing, 2023. Str. 444. ISBN 978-3-948023-30-0.\u00a0<a href=\"https:\/\/www.eusv-congress.eu\/fileadmin\/congress\/media\/ecv2023\/pdf\/ECV_2023_Abstract_booklet.pdf\">https:\/\/www.eusv-congress.eu\/fileadmin\/congress\/media\/ecv2023\/pdf\/ECV_2023_Abstract_booklet.pdf<\/a><\/li>\n<li>VOGRINEC, Lana, PAJEK ARAMBA\u0160I\u0106, Ne\u017ea, CURK, Toma\u017e, KRANJC, Luka, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, LENGAR, \u017diva, FERLE, Maja, VU\u010cUROVI\u0106, Ana, MEHLE, Nata\u0161a, RAVNIKAR, Maja, GUTI\u00c9RREZ-AGUIRRE, Ion, KUTNJAK, Denis. Assessing virome diversity across ecosystems : from plants to water samples. V: TABAIN, Irena (ur.).\u00a0<em>Power of Viruses : programme and abstracts : September 25\u201328, 2024 Zadar, Croatia<\/em>. Zagreb: Croatian Microbiological Society, 2024. Str. 31.\u00a0<a href=\"https:\/\/hmd-cms.hr\/power-of-viruses-2024\/wp-content\/uploads\/abstract-book-PoV-2024-1.pdf\">https:\/\/hmd-cms.hr\/power-of-viruses-2024\/wp-content\/uploads\/abstract-book-PoV-2024-1.pdf<\/a><\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, MIOVI\u010c, Zarja, KUTNJAK, Denis. Raziskovanje viromov makrofitov z uporabo dveh razli\u010dnih pristopov. V: KU\u0160AR, Darja (ur.), JAMNIKAR CIGLENE\u010cKI, Ur\u0161ka (ur.).\u00a0<em> kongres Slovenskega mikrobiolo\u0161kega dru\u0161tva : knjiga povzetkov : 14.\u201316. februar 2024<\/em>. Ljubljana: Slovensko mikrobiolo\u0161ko dru\u0161tvo, 2024. Str. 140. ISBN 978-961-96562-0-4.\u00a0<a href=\"https:\/\/smd2024.si\/wp-content\/uploads\/2024\/02\/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf\">https:\/\/smd2024.si\/wp-content\/uploads\/2024\/02\/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf<\/a><\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, LENGAR, \u017diva, BA\u010cI\u010c, Martina, MIOVI\u010c, Zarja, KUTNJAK, Denis. High-throughput sequencing reveals hidden viral diversity in aquatic plants. V: TABAIN, Irena (ur.).\u00a0<em>Power of Viruses : programme and abstracts : September 25\u201328, 2024 Zadar, Croatia<\/em>. Zagreb: Croatian Microbiological Society, 2024. Str. 54.\u00a0<a href=\"https:\/\/hmd-cms.hr\/power-of-viruses-2024\/wp-content\/uploads\/abstract-book-PoV-2024-1.pdf\">https:\/\/hmd-cms.hr\/power-of-viruses-2024\/wp-content\/uploads\/abstract-book-PoV-2024-1.pdf<\/a><\/li>\n<li>VOGRINEC, Lana, PAJEK ARAMBA\u0160I\u0106, Ne\u017ea, CURK, Toma\u017e, KRANJC, Luka, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, LENGAR, \u017diva, FERLE, Maja, VU\u010cUROVI\u0106, Ana, MEHLE, Nata\u0161a, RAVNIKAR, Maja, GUTI\u00c9RREZ-AGUIRRE, Ion, KUTNJAK, Denis. Looking beyond hosts to better understand virus diversity and epidemiology in ecosystems. V:\u00a0<em>Virus evolution: the mutualism-antagonism continuum of virus-virus interactions = \u00c9volution des virus: le continuum mutualisme \u2013 antagonisme des interactions virus &#8211; virus : Conf\u00e9rences Jacques-Monod : Roscoff (Brittany), France, October 14-18 &#8211; 14-18 octobre 2024<\/em>. Conf\u00e9rences Jacques-Monod, Roscoff (Brittany), France, October 14-18, 2024<\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, LENGAR, \u017diva, FERLE, Maja, GUTI\u00c9RREZ-AGUIRRE, Ion, KUTNJAK, Denis. From water to wild plants : exploring plant virus diversity of various sample types through high-throughput sequencing data analysis. V:\u00a0<em>ViBioM 2024 : International Virus Bioinformatics Meeting : 28.\u201330. May 2024, Leuven, Belgium<\/em>. ViBioM 2024, International Virus Bioinformatics Meeting, 28.\u201330. May 2024, Leuven, Belgium. Jena: Friedrich-Schiller-Universit\u00e4t, 2024. [1] str., ilustr.\u00a0<a href=\"https:\/\/cloud.uni-jena.de\/s\/zHAHa9wYfmEMpYs?dir=undefined&amp;path=%2FSession%20B&amp;openfile=97426048\">https:\/\/cloud.uni-jena.de\/s\/zHAHa9wYfmEMpYs?dir=undefined&amp;path=%2FSession%20B&amp;openfile=97426048<\/a><\/li>\n<li>PAJEK ARAMBA\u0160I\u0106, Ne\u017ea, KRANJC, Luka, BA\u010cNIK, Katarina, VOGRINEC, Lana, BA\u010cI\u010c, Martina, MEHLE, Nata\u0161a, CURK, Toma\u017e, KUTNJAK, Denis. How can data mining support discovery and characterisation of plant viruses?. V:\u00a0International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 84-85. [COBISS.SI-ID\u00a0<a href=\"https:\/\/plus.cobiss.net\/cobiss\/si\/sl\/bib\/233192963\">233192963<\/a>]<\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, FOWKES, Aimee, LENGAR, \u017diva, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Aquatic plants harbour diverse viruses, including important crop pathogens. V:\u00a0International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 73-74. [COBISS.SI-ID\u00a0<a href=\"https:\/\/plus.cobiss.net\/cobiss\/si\/sl\/bib\/233193475\">233193475<\/a>]<\/li>\n<li>VOGRINEC, Lana, BA\u010cNIK, Katarina, BA\u010cI\u010c, Martina, FOWKES, Aimee, LENGAR, \u017diva, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis.\u00a0Unveiling plant virus diversity in aquatic plants through sequencing-based approaches : ViBioM, The International Virus Bioinformatics Meeting, 13\u201315 May 2025, Lisbon, Portugal. [COBISS.SI-ID\u00a0<a href=\"https:\/\/plus.cobiss.net\/cobiss\/si\/sl\/bib\/238351619\">238351619<\/a>]<\/li>\n<li>Lana Vogrinec, Maja Ferle, Ziva Lengar, Martina Bacic, Aimee R Fowkes, Val Harju, Ian P Adams, Adrian Fox, Natasa Mehle, Ion Gutierrez-Aguirre, Katarina Bacnik, Denis Kutnjak. Plant viruses on the land-water interface. International Symposium of Plant Virus Epidemiology, June 30 \u2013 July 3 2025, Sao Paulo, Brazil.<\/li>\n<li>KUTNJAK, Denis. Addressing plant virus diversity and epidemiology through virome investigation across ecosystem fractions : lecture at EPSO Science day, 18 June 2025, NIB, Ljubljana.<\/li>\n<\/ul>\n<p>&nbsp;<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Published papers RIVAREZ, Mark Paul Selda, FAURE, Chantal, SVANELLA-DUMAS, Laurence Svanella-Dumas, PECMAN, Anja, TU\u0160EK-\u017dNIDARI\u010c, Magda, SCH\u00d6NEGGER, Deborah, RAVNIKAR, Maja, KUTNJAK, Denis, et al. Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse plants and global sequencing data.\u00a0Phytopathology : an international journal of the American Phytopathological Society. ilustr., zvd. ISSN 1943-7684.\u00a0https:\/\/doi.org\/10.1094\/PHYTO-12-22-0465-V ROS-MONER, Eric, JIM\u00c9NEZ-G\u00d3NGORA, Tamara, [&hellip;]<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":3,"comment_status":"closed","ping_status":"closed","template":"page-fullwidth.php","meta":{"jetpack_post_was_ever_published":false,"footnotes":""},"class_list":["post-30","page","type-page","status-publish","hentry"],"jetpack_sharing_enabled":true,"jetpack_shortlink":"https:\/\/wp.me\/P7OqMV-u","jetpack-related-posts":[],"_links":{"self":[{"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/pages\/30","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/comments?post=30"}],"version-history":[{"count":22,"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/pages\/30\/revisions"}],"predecessor-version":[{"id":489,"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/pages\/30\/revisions\/489"}],"wp:attachment":[{"href":"https:\/\/projects.nib.si\/phew\/wp-json\/wp\/v2\/media?parent=30"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}