Publications

Project report: Project_report

Bibliografski in drugi doseženi rezultati projektne skupine

Že objavljeni znanstveni članki, ki so rezultat tega projekta

TIBERINI, Antonio, MANGLLI, Ariana, TAGLIENTI, Anna, VUČUROVIĆ, Ana, BRODARIČ, Jakob, FERRETTI, Luca, LUIGI, Marta, GENTILI, Andrea, MEHLE, Nataša. Development and validation of a one-step reverse transcription real-time PCR assay for simultaneous detection and identification of tomato mottle mosaic virus and tomato brown rugose fruit virus. Plants. 11 Feb. 2022, vol. 11, iss. 4, str. 1-20, ilustr. ISSN 2223-7747. https://www.mdpi.com/2223-7747/11/4/489, DOI: 10.3390/plants11040489.

MAKSIMOVIĆ, Olivera, LENGAR, Živa, KOGEJ, Zala, BAČNIK, Katarina, BAJDE, Irena, MILAVEC, Mojca, ŽUPANIČ, Anže, MEHLE, Nataša, KUTNJAK, Denis, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion. Evaluation of methods and processes for robust monitoring of SARS-CoV-2 in wastewater. Food and environmental virology. 23 Aug 2022, str. 1-17, ilustr. ISSN 1867-0334. https://link.springer.com/article/10.1007/s12560-022-09533-0, DOI: 10.1007/s12560-022-09533-0.

MEHLE, Nataša, BAČNIK, Katarina, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, KITEK, Miha, KUTNJAK, Denis, LOH, Yue Lin, MAKSIMOVIĆ, Olivera, RAVNIKAR, Maja, VOGEL, Elise, VOS, Christine, VUČUROVIĆ, Ana. Tomato brown rugose fruit virus in aqueous environments : survival and significance of water-mediated transmission. Frontiers in plant science. 2023, vol. 14, art. 1187920, str. 1-15, ilustr. ISSN 1664-462X. https://doi.org/10.3389/fpls.2023.1187920, https://www.frontiersin.org/articles/10.3389/fpls.2023.1187920/full#supplementary-material, DOI: 10.3389/fpls.2023.1187920.

RIVAREZ, Mark Paul Selda, PECMAN, Anja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, VUČUROVIĆ, Ana, SELJAK, Gabrijel, MEHLE, Nataša, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, KUTNJAK, Denis. In-depth study of tomato and weed viromes reveals undiscovered plant virus diversity in an agroecosystem. Microbiome. 2023, vol. 11, art. 60, str. [1]-24, ilustr. ISSN 2049-2618. https://doi.org/10.1186/s40168-023-01500-6, https://dirros.openscience.si/IzpisGradiva.php?id=16442, DOI: 10.1186/s40168-023-01500-6.

MAKSIMOVIĆ, Olivera, BAČNIK, Katarina, RIVAREZ, Mark Paul Selda, VUČUROVIĆ, Ana, MEHLE, Nataša, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis. Virome analysis of irrigation water sources provides extensive insights into the diversity and distribution of plant viruses in agroecosystems. Water research. Feb. 2024, vol. 249, art. no. 120712, str. [1]-15, ilustr., zvd. ISSN 0043-1354. https://doi.org/10.1016/j.watres.2023.120712 , DiRROS – Digitalni repozitorij raziskovalnih organizacij Slovenije, DOI: 10.1016/j.watres.2023.120712. [COBISS.SI-ID 172665347]

Predstavitve rezultatov dela na konferencah/ strokovnih srečanjih v obliki predavanj ali postrov:

  1. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo (Portorož, 1.-2.3.2022):
  • Predavanje: MEHLE, Nataša, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, VUČUROVIĆ, Ana. Pomen vode za razširjanje virusa rjave grbančavosti plodov paradižnika = Water-linked epidemiology of tomato brown rugose fruit virus.
  • Poster: VUČUROVIĆ, Ana, BRODARIČ, Jakob, TIBERINI, Antonio, LUIGI, Marta, FAGGIOLI, Francesco, MEHLE, Nataša. Virus lisavosti in mozaika paradižnika : nov sovražnik paradižnika in paprike = Tomato mottle mosaic virus : new enemy affecting tomatoes and peppers.

Občni zbor Slovenskega združenja za integrirano pridelavo zelenjave (spletno srečanje, 29.3.2022):

  • Predavanje: MEHLE, Nataša, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, BRODARIČ, Jakob, KITEK, Miha, BAJDE, Irena, VUČUROVIĆ, Ana. Virus rjave grbančavosti plodov paradižnika (ToBRFV) in pomen vode za njegovo razširjanje.

ISFEV 2022 – The Seventh International Conference on Food and Environmental Virology (Santiago de Compostela, Španija, 16.-20.5.2022):

  • Predavanje: MAKSIMOVIĆ, Olivera, BAČNIK, Katarina, KUTNJAK, Denis, RIVAREZ, Mark Paul Selda, VUČUROVIĆ, Ana, MEHLE, Nataša, SELJAK, Gabrijel, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion. A plant virus tale : from wastewater to irrigation crops.
  • Predavanje: MAKSIMOVIĆ, Olivera, BAČNIK, Katarina, LENGAR, Živa, KOGEJ ZWITTER, Zala, MILAVEC, Mojca, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion. Lesson learned from monitoring of SARS-COV-2 in Slovenian wastewater.

MSS2022 – Monolith Summerschool and symposium (Portorož, Junij 2022):

  • Predavanje: MAKSIMOVIC Olivera et al. Combination of CIM monolith chromatography and high throughput sequencing (HTS) to study the plant virus composition of irrigation waters and its impact in crop plants.

5th ISPVE – Epidemiology and management of plant viruses under a changing climate (Madrid, Španija, 5.-8.6.2022):

  • Predavanje: VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, MEHLE, Nataša. Tomato brown rugose fruit virus in aqueous environments : survival and significance of water-mediated transmission.

International conference of the Slovenian Society of Plant Biology (Plants in Changing Environment) (15.-16.9.2022):

  • Predavanje: VUČUROVIĆ, Ana, BRODARIČ, Jakob, BAJDE, Irena, TIBERINI, Antonio, LUIGI, Marta, MANGLLI, Ariana, FAGGIOLI, Francesco, MEHLE, Nataša. Tomato mottle mosaic virus: newly discovered enemy affecting tomatoes and peppers.

CEFood, 11th Central European Congress on Food and Nutrition “Food, technology and nutrition for healthy people in a healthy environment“ (Čatež ob Savi, 27.9.2022):

  • Poster: VUČUROVIĆ, Ana,BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, LOH Yue Lin, MEHLE, Nataša. Tomato brown rugose fruit virus in aqueous environments – survival and significance of water-mediated transmission
  • Predavanje: VUČUROVIĆ, Ana, BAČNIK, Katarina, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis, RAVNIKAR, Maja, CURK, Tomaž, Štravs, Rok, MEHLE, Nataša. Discovery and water-linked epidemiology of emergent tobamoviruses infecting crops

AAB, International Advances in Plant Virology (Ljubljana, 5.-7.10.2022):

  • Predavanje: VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, FOX, Adrian, LOH Yue Lin, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, MEHLE, Nataša, Water-linked epidemiology of tomato brown rugose fruit virus.
  • Predavanje: MAKSIMOVIC Olivera, BACNIK, Katarina, SELDA RIVAREZ Mark Paul, KUTNJAK; Denis, RAVNIKAR, Maja, GUTIERREZ-AGUIRRE, Ion, Virome analysis of selected irrigation waters in Slovenia focusing on plant viruses.
  • Poster: BAČNIK, Katarina, MEHLE, Nataša, CURK, Tomaž, KUTNJAK, Denis. Discovery and genomic characterisation of novel tobamoviruses through meta-analysis of public sequence datasets
  • Poster: VUČUROVIĆ, Ana, BRODARIČ, Jakob, TIBERINI, Antonio, LUIGI, Marta, FAGGIOLI, Francesco, MEHLE, Nataša. Tomato mottle mosaic virus: a newly discovered threat to tomatoes and peppers

XXXII Plant Protection Forum (Keszthely, Madžarska, 18.-20.1.2023):

  • Vabljeno predavanje: MEHLE, Nataša, VUČUROVIĆ, Ana, KUTNJAK, Denis, GUTIÉRREZ-AGUIRRE, Ion, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, BRODARIČ, Jakob, BAJDE, Irena, KITEK, Miha, RAVNIKAR, Maja. The impact of water mediated transmission of plant viruses.

Novi izzivi v agronomiji 2023 = New Challenges in Agronomy 2023 (Laško, 26.-27.1.2023):

  • Predavanje: VUČUROVIĆ, Ana, BAČNIK, Katarina, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, GUTIÉRREZ-AGUIRRE, Ion, KITEK, Miha, KUTNJAK, Denis, LOH, Yue Lin, MAKSIMOVIĆ, Olivera, RAVNIKAR, Maja, MEHLE, Nataša, et al. Preživetje virusa rjave grbančavosti plodov paradižnika in njegov prenos z vodo = Survival in and transmission by water of tomato brown rugose fruit virus.

EURL Virology Workshop – interpretation of ToBRFV results (online, 14.2.2023):

  • Predavanje: MEHLE, Nataša. ToBRFV in water

12th International Congress on Plant Pathology – ICPP2023 (Lyon, France, 20.-25.8.2023):

  • Poster: KUTNJAK, Denis, RIVAREZ, Mark Paul Selda, MAKSIMOVIĆ, Olivera, BAČNIK, Katarina, KOGEJ ZWITTER, Zala, PECMAN, Anja, LENGAR, Živa, MEHLE, Nataša, VUČUROVIĆ, Ana, GUTIÉRREZ-AGUIRRE, Ion, RAVNIKAR, Maja. Virome analysis of multiple sample types brings extended insights into the plant virus presence in the ecosystem.
  • Poster: BAČNIK, Katarina, VOGRINEC, Lana, CURK, Tomaž, BAČIČ, Martina, MEHLE, Nataša, KUTNJAK, Denis. Data mining-based discovery of novel tobamoviruses and viruses associated with macrophytes.
  • Predavanje: MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, MAKSIMOVIĆ, Olivera, FOX, Adrian, KITEK, Miha, LOH, Yue Lin, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis, BAČNIK, Katarina, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Water and soil contaminated with emerging tobamoviruses are the source of plant infections. 

Slovenian Microbiome Network Symposium (Maribor, 30.11.-1.12.2023):

  • Predavanje: BAČNIK, Katarina, VOGRINEC, Lana, Turk Dermastia, Timotej, Pajek ARAmBašič, Neža, CURK, Tomaž, BAČIČ, Martina, MEHLE, Nataša, KUTNJAK, Denis. Data mining-based discovery of (novel) viral sequences in various host organisms and environmental samples

20th Meeting of the EFSA Network on plant health risk assessment (on-line, 6.12.2023):

  • Vabljeno predavanje: KUTNJAK et al. Advances in high-throughput sequencing give new opportunities for virus detection towards a ONE Health approach

Varstvo vrtnin – Srečanje s kmetijskimi svetovalci JSKS (UVHVVR organizator) (on-line, 19. december 2023):

  • Predavanje: MEHLE, Nataša. Kako lahko preprečimo vnos oziroma širjenje virusa rjave grbančavosti plodov paradižnika?

Usposabljanje za strokovni izpit s področja zdravstvenega varstva rastlin (KIS, 1. 2.2024):

  • Predavanje: MEHLE, Nataša. Fitoplazma Grapevine Flavescence dorée, Tomato leaf curl New delhi virus, Tomato brown rugose fruit virus
  1. kongres Slovenskega mikrobiološkega društva (Maribor, 14.–16. 2.2024):
  • Vabljeno predavanje: RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion, DOBNIK, David, FILIPIĆ, Arijana, BAČNIK, Katarina, MAKSIMOVIĆ, Olivera, PREZELJ, Nina, BOGOŽALEC KOŠIR, Alexandra, VUČUROVIĆ, Ana, MILAVEC, Mojca, ŽUPANIČ, Anže, MEHLE, Nataša, KUTNJAK, Denis. Vode – vir informacij o naravi in družbi.
  • Poster: MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, KUTNJAK, Denis, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Voda in rastni substrat onesnaženi s tobamovirusi – vir okužbe rastlin
  1. slovensko posvetovanje o varstvu rastlin z mednarodno udeležbo (Bohinjska Bistrica, 5.-6.3.2024):
  • Predavanje: MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, KUTNJAK, Denis, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Rastni substrat in voda onesnaženi s tobamovirusi so lahko vir okužbe rastlin 

8th ISFEV Conference, International Society for Food and Environmental Virology (Tokyo, Japan, 9-14.6.2024):

  • Predavanje: KUTNJAK, Denis, MAKSIMOVIĆ, Olivera, RIVAREZ, Mark Paul Selda, BAČNIK, Katarina, KOGEJ ZWITTER, Zala, PECMAN, Anja, LENGAR, Živa, MEHLE, Nataša, VUČUROVIĆ, Ana, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion. Exploring plant virus presence in an agroecosystem through comprehensive virome analysis of weeds, crop plants and irrigation water.

 Power of viruses (Zadar, Hrvaška, 25.-28.9.2024):

  • Poster: MEHLE, Nataša, BAJDE, Irena, BRODARIČ, Jakob, FOX, Adrian, KITEK, Miha, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis, BAČNIK, Katarina, RAVNIKAR, Maja, VUČUROVIĆ, Ana. Water and soil contaminated with emerging tobamoviruses are the source of plant infections.
  • Poster: KRANJC, Luka, PAJEK ARAMBAŠIĆ, Neža, BAČNIK, Katarina, CURK, Tomaž, KUTNJAK, Denis. Viral Treasure Hunt: Unearthing Novel Tobamoviruses in Public Databases.
  • Vabljeno predavanje: VOGRINEC; Lana, PAJEK ARAMBAŠIĆ, Neža, CURK, Tomaž, KRANJC, Luka, BAČNIK, Katarina, BAČIČ Martina, LENGAR, Živa, FERLE, Maja, VUČUROVIĆ, Ana, MEHLE, Nataša, RAVNIKAR; Maja, GUTIERREZ AGIRRE Ion, KUTNJAK, Denis. Assessing virome diversity across ecosystems: from plants to water samples

Druga poročila o rezultatih raziskav, ki so prosto dostopna širši javnosti:

MEHLE, Nataša, BAJDE, Irena, BRODARIČ, VUČUROVIĆ, Ana. Report on the results of the test performance study on detection and identification of tomato mottle mosaic virus (ToMMV) using molecular tests. Version: V2.0. (17.9.2024). Poročilo bo v kratkem objavljeno na spletni strani Euphresco.

Podatki iz tega poročila bodo vključeni in dostopni tudi na EPPO database on diagnostic expertise: https://dc.eppo.int/validation_data/validationlist .

Vključenost mladih raziskovalcev, dodiplomskih in podiplomskih študentov:

V delo na projektu, za naloge iz DP2, je bil vključen študent Univerze v Ljubljani – diplomska in magistrska naloga:

  • KITEK, Miha (mentor Nataša Mehle). Možnost razširjanja virusa rjave grbančavosti plodov paradižnika z vodo : diplomsko delo = Tomato brown rugose fruit virus – the possibility of water-mediated transmission : B. Sc. thesis. Ljubljana, 2022
  • KITEK, Miha (mentor Nataša Mehle; somentor Ana Vučurović). Pomen obstojnosti virusa lisavosti in mozaika paradižnika v vodi za širjenje okužbe: magistrsko delo – v teku (zagovor predviden v začetku leta 2025)

V delo na projektu, za naloge iz DP3, je bila vključena doktorska študentka Olivera Maksimović (mentor Ion GUTIÉRREZ-AGUIRRE):

  • Maksimović, Olivera. Development and employment of untargeted and targeted tools for virus detection in the frame of water-based epidemiology : PhD thesis. Ljubljana, 2023

Delno je bil v delo na projektu vključen tudi doktorski študentk Mark Paul Selda Rivarez (mentor Denis KUTNJAK):

  • RIVAREZ, Mark Paul Selda. Diversity of viruses infecting tomato and weed plants in agroecosystems : doctoral dissertation = Raznolikost virusov paradižnika in plevelnih rastlin v kmetijskih ekosistemih: doktorska disertacija. Ljubljana: [M. P. Selda Rivarez], 2022.