Publications

Published papers

  • RIVAREZ, Mark Paul Selda, FAURE, Chantal, SVANELLA-DUMAS, Laurence Svanella-Dumas, PECMAN, Anja, TUŠEK-ŽNIDARIČ, Magda, SCHÖNEGGER, Deborah, RAVNIKAR, Maja, KUTNJAK, Denis, et al. Diversity and pathobiology of an ilarvirus unexpectedly detected in diverse plants and global sequencing data. Phytopathology : an international journal of the American Phytopathological Society. ilustr., zvd. ISSN 1943-7684. https://doi.org/10.1094/PHYTO-12-22-0465-V
  • ROS-MONER, Eric, JIMÉNEZ-GÓNGORA, Tamara, VILLAR-MARTIN, Luis, VOGRINEC, Lana, GONZÁLEZ-MIGUEL, Víctor M., KUTNJAK, Denis, RUBIO-SOMOZA, Ignacio. Conservation of molecular responses upon viral infection in the non-vascular plant Marchantia polymorpha. Nature communications. Sep. 2024, vol. 15, iss. 1, article no. 8326, str. 1-17, ilustr. ISSN 2041-1723. https://doi.org/10.1038/s41467-024-52610-0
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, MEHLE, Nataša, FOWKES, Aimee R., LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Wild and globally traded ornamental aquatic plants harbor diverse plant viruses, including notable crop pathogens. Environmental microbiome. Oct. 2025, vol. 20, [article no.] 133, str. 1-23, ilustr. ISSN 2524-6372. https://doi.org/10.1186/s40793-025-00783-6

 

Papers in progress

  • Spatiotemporal dynamics of virome composition along the antropogenically influenced river segment (expected publication date: 2026)
  • Tracking the dynamics of plant viromes across urban, wild and cultivated environments (expected publication date: 2026/2027)

 

Conference contributions

  • BAČNIK, Katarina, VOGRINEC, Lana, CURK, Tomaž, BAČIČ, Martina, MEHLE, Nataša, KUTNJAK, Denis. Data mining-based discovery of novel tobamoviruses and viruses associated with macrophytes. V: 12th International Congress on Plant Pathology : ICPP2023 : 20-25 August 2023, Lyon, France. Lyon: French Phytopathological Society: 2023. 2023, str. 1253-1254. https://www.icpp2023.org/sites/default/files/2023-08/ICPP2023-BOOK-ABSTRACTS-VF.pdf
  • BAČNIK, Katarina, VOGRINEC, Lana, TURK DERMASTIA, Timotej, PAJEK ARAMBAŠIĆ, Neža, CURK, Tomaž, BAČIČ, Martina, MEHLE, Nataša, KUTNJAK, Denis. Data mining-based discovery of (novel) viral sequences in various host organisms and environmental samples. V: STOPNIŠEK, Nejc (ur.). Slovenian Microbiome Network Symposium 2023 : Defining a healthy microbiome : 30. 11. – 1. 12. 2023, Maribor, Slovenia : abstract book. Maribor: Nacionalni laboratorij za zdravje, okolje in hrano, 2023. Str. 25-26. ISBN 978-961-6148-23-8. https://doi.org/10.5281/zenodo.10214965
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, MIOVIČ, Zarja, KUTNJAK, Denis. Viromes of aquatic plants. V: STOPNIŠEK, Nejc (ur.). Slovenian Microbiome Network Symposium 2023 : Defining a healthy microbiome : 30. 11. – 1. 12. 2023, Maribor, Slovenia : abstract book. Maribor: Nacionalni laboratorij za zdravje, okolje in hrano, 2023. Str. 90. ISBN 978-961-6148-23-8. https://doi.org/10.5281/zenodo.10214965
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, KUTNJAK, Denis. Comprehensive review and data mining based discovery of viruses associated with macrophytes. V: Virology 2023 : 8th European Congress : 4-7 May 2023 : Gdansk, Poland : abstracts. Jena: Conventus Congressmanagement & Marketing, 2023. Str. 444. ISBN 978-3-948023-30-0. https://www.eusv-congress.eu/fileadmin/congress/media/ecv2023/pdf/ECV_2023_Abstract_booklet.pdf
  • VOGRINEC, Lana, PAJEK ARAMBAŠIĆ, Neža, CURK, Tomaž, KRANJC, Luka, BAČNIK, Katarina, BAČIČ, Martina, LENGAR, Živa, FERLE, Maja, VUČUROVIĆ, Ana, MEHLE, Nataša, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis. Assessing virome diversity across ecosystems : from plants to water samples. V: TABAIN, Irena (ur.). Power of Viruses : programme and abstracts : September 25–28, 2024 Zadar, Croatia. Zagreb: Croatian Microbiological Society, 2024. Str. 31. https://hmd-cms.hr/power-of-viruses-2024/wp-content/uploads/abstract-book-PoV-2024-1.pdf
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, MIOVIČ, Zarja, KUTNJAK, Denis. Raziskovanje viromov makrofitov z uporabo dveh različnih pristopov. V: KUŠAR, Darja (ur.), JAMNIKAR CIGLENEČKI, Urška (ur.).  kongres Slovenskega mikrobiološkega društva : knjiga povzetkov : 14.–16. februar 2024. Ljubljana: Slovensko mikrobiološko društvo, 2024. Str. 140. ISBN 978-961-96562-0-4. https://smd2024.si/wp-content/uploads/2024/02/2024-02-12-knjiga-povzetkov-SMD_Compress.pdf
  • VOGRINEC, Lana, BAČNIK, Katarina, LENGAR, Živa, BAČIČ, Martina, MIOVIČ, Zarja, KUTNJAK, Denis. High-throughput sequencing reveals hidden viral diversity in aquatic plants. V: TABAIN, Irena (ur.). Power of Viruses : programme and abstracts : September 25–28, 2024 Zadar, Croatia. Zagreb: Croatian Microbiological Society, 2024. Str. 54. https://hmd-cms.hr/power-of-viruses-2024/wp-content/uploads/abstract-book-PoV-2024-1.pdf
  • VOGRINEC, Lana, PAJEK ARAMBAŠIĆ, Neža, CURK, Tomaž, KRANJC, Luka, BAČNIK, Katarina, BAČIČ, Martina, LENGAR, Živa, FERLE, Maja, VUČUROVIĆ, Ana, MEHLE, Nataša, RAVNIKAR, Maja, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis. Looking beyond hosts to better understand virus diversity and epidemiology in ecosystems. V: Virus evolution: the mutualism-antagonism continuum of virus-virus interactions = Évolution des virus: le continuum mutualisme – antagonisme des interactions virus – virus : Conférences Jacques-Monod : Roscoff (Brittany), France, October 14-18 – 14-18 octobre 2024. Conférences Jacques-Monod, Roscoff (Brittany), France, October 14-18, 2024
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, LENGAR, Živa, FERLE, Maja, GUTIÉRREZ-AGUIRRE, Ion, KUTNJAK, Denis. From water to wild plants : exploring plant virus diversity of various sample types through high-throughput sequencing data analysis. V: ViBioM 2024 : International Virus Bioinformatics Meeting : 28.–30. May 2024, Leuven, Belgium. ViBioM 2024, International Virus Bioinformatics Meeting, 28.–30. May 2024, Leuven, Belgium. Jena: Friedrich-Schiller-Universität, 2024. [1] str., ilustr. https://cloud.uni-jena.de/s/zHAHa9wYfmEMpYs?dir=undefined&path=%2FSession%20B&openfile=97426048
  • PAJEK ARAMBAŠIĆ, Neža, KRANJC, Luka, BAČNIK, Katarina, VOGRINEC, Lana, BAČIČ, Martina, MEHLE, Nataša, CURK, Tomaž, KUTNJAK, Denis. How can data mining support discovery and characterisation of plant viruses?. V: International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 84-85. [COBISS.SI-ID 233192963]
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, FOWKES, Aimee, LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Aquatic plants harbour diverse viruses, including important crop pathogens. V: International Advances in Plant Virology 2025 : Murcia, Spain April 8th-11th 2025 : programme and abstract book. International Advances in Plant Virology 2025, Murcia, Spain April 8th-11th 2025. [Warwick: Association of Applied Biologists, 2025]. Str. 73-74. [COBISS.SI-ID 233193475]
  • VOGRINEC, Lana, BAČNIK, Katarina, BAČIČ, Martina, FOWKES, Aimee, LENGAR, Živa, HARJU, Valerie, ADAMS, Ian, FOX, Adrian, KUTNJAK, Denis. Unveiling plant virus diversity in aquatic plants through sequencing-based approaches : ViBioM, The International Virus Bioinformatics Meeting, 13–15 May 2025, Lisbon, Portugal. [COBISS.SI-ID 238351619]
  • Lana Vogrinec, Maja Ferle, Ziva Lengar, Martina Bacic, Aimee R Fowkes, Val Harju, Ian P Adams, Adrian Fox, Natasa Mehle, Ion Gutierrez-Aguirre, Katarina Bacnik, Denis Kutnjak. Plant viruses on the land-water interface. International Symposium of Plant Virus Epidemiology, June 30 – July 3 2025, Sao Paulo, Brazil.
  • KUTNJAK, Denis. Addressing plant virus diversity and epidemiology through virome investigation across ecosystem fractions : lecture at EPSO Science day, 18 June 2025, NIB, Ljubljana.