Results and publications

Preprints:

Potato yield can be predicted by using drone-captured and environmental measurements early in the growing season
Vižintin, Angelika ; Zagorščak, Maja ; Turk, Eva ; Križnik, Maja ; Petek, Marko ; Stare, Katja ; Zrimec, Jan ; Gruden, Kristina
Tip dela: 1.25 drugi sestavni deli
Leto: 2026
Vir: bioRxiv [Elektronski vir] : ǂthe ǂpreprint server for biology. – ISSN 2692-8205. – Str. 1-49
COBISS.si-ID 272513795

Publications:

Evaluating plant growth–defense trade-offs by modelingthe interaction between primary and secondary metabolism

Zrimec, Jan ; Correo, Sandra ; Zagorščak, Maja ; Petek, Marko ; Bleker, Carissa ; Stare, Katja ; Schuy, Christian ; Sonnewald, Sophia ; Gruden, Kristina ; Nikoloski, Zoran

Type of work: 1.01 original scientific article

Year: 2025

Source: Proceedings of the National Academy of Sciences of the United States of America [Elektronski vir]. – ISSN 1091-6490. – ǂVol. ǂ122, ǂno. ǂ32, [article no.] e2502160122, str. 1-11

COBISS.si-ID 246042883

Integration of multi-omics data and deep phenotyping provides insights into responses to single and combined abiotic stress in potato
Zagorščak Maja ; Abdelhakim, Lamis ; Rodriguez-Granados, Natalia Yaneth ; Bleker, Carissa ; Blejec, Andrej ; Zrimec, Jan ; Baebler, Špela ; Županič, Anže ; Pompe Novak, Maruša ; Gruden, Kristina
Type of work: 1.01 original scientific article
Year: 2025
Source: Plant physiology. – ISSN 1532-2548. – ǂVol. ǂ197, ǂiss. ǂ4, [article no.] kiaf126, str. 1-42
COBISS.si-ID 231332611

Evidence-based unification of potato gene models with the UniTato collaborative genome browser

Zagorščak, Maja ; Zrimec, Jan ; Bleker, Carissa ; Nolte, Nadja Franziska ; Juteršek, Mojca ; Ramšak, Živa ; Gruden, Kristina ; Petek, Marko

Type of work: 1.01 original scientific article

Year: 2024

Source: Frontiers in plant science [Elektronski vir]. – ISSN 1664-462X. – ǂVol. ǂ15, ǂ[art. no.] ǂ1352253, str. 1-10

COBISS.si-ID 198532867

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors

Tomaž, Špela ; Petek, Marko ; Lukan, Tjaša ; Pogačar, Karmen ; Stare, Katja ; Teixeira Prates, Erica ; Jacobson, Daniel A. ; Zrimec, Jan ; Bajc, Gregor ; Butala, Matej ; Pompe Novak, Maruša ; Taler-Verčič, Ajda ; Usenik, Aleksandra ; Turk, Dušan ; Coll Rius, Anna ; Gruden, Kristina

Type of work: 1.01 original scientific article

Year: 2022

Source: Plant physiology. – ISSN 0032-0889. – ǂVol. ǂ191, ǂiss. ǂ3, str. 1934–1952

COBISS.si-ID 135092739

Controlling gene expression with deep generative design of regulatory DNA

Zrimec, Jan ; Fu, Xiaozhi ; Sheikh Muhammad, Azam ; Skrekas, Christos ; Jauniskis, Vykintas ; Speicher, Nora K. ; Börlin, Christoph S. ; Verendel, Vilhelm ; Chehreghani, Morteza Haghir ; Dubhashi, Devdatt P. ; Siewers, Verena ; Fitz, Florian David ; Nielsen, Jens ; Zelezniak, Aleksej

Type of work: 1.01 original scientific article

Year: 2022

Source: Nature communications [Elektronski vir]. – ISSN 2041-1723. – Vol. 13, str. 1-17

COBISS.SI-ID 120155139

Toward learning the principles of plant gene regulation
Zrimec, Jan ; Zelezniak, Aleksej ; Gruden, Kristina
Type of work: 1.03 short scientific article
Year: 2022
Source: Trends in Plant Science. – ISSN 1360-1385. – Vol. 27, iss. 12, str. 1206-1208
COBISS.SI-ID 123482371

Learning deep representations of enzyme thermal adaptation

Li, Gang ; Buric, Filip ; Zrimec, Jan ; Viknander, Sandra ; Nielsen, Jens ; Zelezniak, Aleksej ; Engqvist, Martin K. M.

Type of work: 1.01 original scientific article

Year: 2022

Source: Protein science [Elektronski vir]. – ISSN 1469-896X. – Vol. 31, iss. 12, 1-14 str.

COBISS.SI-ID 130304771

Conference presentations:

Decoding potato responses to climate stress through integrative omics [Elektronski vir]

Godec, Tim ; Petek, Marko ; Bleker, Carissa ; Križnik, Maja ; Zagorščak, Maja ; Zrimec, Jan ; Panzarova, Klara ; Abdelhakim, Lamis ; Županič, Anže ; Gruden, Kristina